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Calculate the average ranking and average expression of stable genes

Source: R/get_final_ranking_values.R
avg_ranking.Rd

Calculate the average ranking and average expression of stable genes

Usage

avg_ranking(sum_exp, assay_to_use, stable_genes = NULL)

Arguments

sum_exp

Summarized experiment object. It should contain a "rank" slot that will be used to calculate the average rank of the stable genes.

assay_to_use

A string. Which assay to use when calculating the average expression of the stable genes.

stable_genes

A vector. A list with 44 genes that will be used to the qPCR-like normalization if NULL (default).

Examples

if (FALSE) { # \dontrun{
avg_ranking(tcga, "logFPKM_TMM", c("GAPDH"))
} # }