Package index • ember

All functions

avg_ranking(): Calculate the average ranking and average expression of stable genes

calculate_norm_ranks(): Calculate the average expression and ranking based on stable genes

get_base_plot(): Plot PCA embedding of the 3 big cohorts to serve as a base plot

get_final_ranking_values(): Wrapper for prepare_data_normalization avg_ranking and calculate_norm_ranks

get_gene_sets(): Get gene sets formatted to apply the scores

get_pca_coordinates(): Get the PCA projection coordinates for a dataset

get_regressed_data(): Get regressed data

get_scores_regressed(): Calculate scores for samples with regressed data

prepare_data_normalization(): Prepare the data for normalization