Calculate the average expression and ranking based on stable genes — calculate_norm_ranks • ember

Calculate the average expression and ranking based on stable genes

Usage

calculate_norm_ranks(sum_exp, assay_to_use, avg_ranking_sds)

Arguments

sum_exp: Summarized experiment object. It should contain a "rank" slot that will be used to calculate the average rank of the stable genes.
assay_to_use: A string. Which assay to use when calculating the average expression of the stable genes.
avg_ranking_sds: A list. Output from the function avg_ranking

Examples

if (FALSE) { # \dontrun{
calculate_norm_ranks(tcga, "logFPKM_TMM", output_avg_ranking)
} # }